# Elnora — Developer Documentation

> Elnora is an AI agent for automated preclinical lab work. This portal documents the developer surface: the REST API, the `elnora` CLI, the hosted MCP server, and plugins. Integrate over `https://platform.elnora.ai/api/v1` (auth: `X-API-Key`) or connect any MCP client to `https://mcp.elnora.ai/mcp`.

- Full text of every page: [llms-full.txt](https://docs.elnora.ai/llms-full.txt)
- Dashboard & API keys: https://platform.elnora.ai

## Get started

- [Welcome to Elnora](https://docs.elnora.ai/docs/get-started): The developer platform for Elnora — the REST API, the elnora CLI, the MCP server, and plugins. Built for developers and AI agents.
- [Authentication](https://docs.elnora.ai/docs/get-started/authentication): Authenticate to the Elnora API with an API key or OAuth.
- [Core concepts](https://docs.elnora.ai/docs/get-started/concepts): The building blocks of the Elnora platform — organizations, tasks, files, the knowledge base, and more.
- [Quickstart](https://docs.elnora.ai/docs/get-started/quickstart): Create an account, get an API key, and make your first authenticated call to the Elnora API.

## REST API reference

- [REST API reference](https://docs.elnora.ai/docs/api): The Elnora core REST API — base URL, authentication, conventions, and the full resource catalog.
- [Account](https://docs.elnora.ai/docs/api/reference/account): Account endpoints of the Elnora REST API.
- [API keys](https://docs.elnora.ai/docs/api/reference/api-keys): API keys endpoints of the Elnora REST API.
- [Audit log](https://docs.elnora.ai/docs/api/reference/audit): Audit log endpoints of the Elnora REST API.
- [Feedback](https://docs.elnora.ai/docs/api/reference/feedback): Feedback endpoints of the Elnora REST API.
- [Files](https://docs.elnora.ai/docs/api/reference/files): Files endpoints of the Elnora REST API.
- [Folders](https://docs.elnora.ai/docs/api/reference/folders): Folders endpoints of the Elnora REST API.
- [Invitations](https://docs.elnora.ai/docs/api/reference/invitations): Invitations endpoints of the Elnora REST API.
- [Library](https://docs.elnora.ai/docs/api/reference/library): Library endpoints of the Elnora REST API.
- [Organizations](https://docs.elnora.ai/docs/api/reference/organizations): Organizations endpoints of the Elnora REST API.
- [Projects](https://docs.elnora.ai/docs/api/reference/projects): Projects endpoints of the Elnora REST API.
- [Search](https://docs.elnora.ai/docs/api/reference/search): Search endpoints of the Elnora REST API.
- [Tasks & messages](https://docs.elnora.ai/docs/api/reference/tasks): Tasks & messages endpoints of the Elnora REST API.
- [Version](https://docs.elnora.ai/docs/api/reference/version): Version endpoints of the Elnora REST API.

## CLI reference

- [CLI reference](https://docs.elnora.ai/docs/cli): Install the elnora CLI, authenticate, and explore every command — generated from the CLI's own command registry.
- [Account](https://docs.elnora.ai/docs/cli/account): Manage your account profile and legal agreements.
- [Api Keys](https://docs.elnora.ai/docs/cli/api-keys): Create, list, and revoke API keys for programmatic access.
- [Audit](https://docs.elnora.ai/docs/cli/audit): Read your organization's audit log.
- [Auth](https://docs.elnora.ai/docs/cli/auth): Authenticate the CLI and manage profiles (CLI-only).
- [Feedback](https://docs.elnora.ai/docs/cli/feedback): Submit product feedback.
- [Files](https://docs.elnora.ai/docs/cli/files): Upload, manage, and organize workspace files.
- [Flags](https://docs.elnora.ai/docs/cli/flags): Read feature flags.
- [Folders](https://docs.elnora.ai/docs/cli/folders): Create and manage folders.
- [Health](https://docs.elnora.ai/docs/cli/health): Check platform and service health.
- [Library](https://docs.elnora.ai/docs/cli/library): Manage your organization's shared library.
- [Orgs](https://docs.elnora.ai/docs/cli/orgs): Manage organizations, members, and invitations.
- [Projects](https://docs.elnora.ai/docs/cli/projects): Create and manage projects and their members.
- [Protocols](https://docs.elnora.ai/docs/cli/protocols): Generate and optimize bioprotocols.
- [Review](https://docs.elnora.ai/docs/cli/review): Approve or reject Knowledge Base auto-tidy proposals.
- [Search](https://docs.elnora.ai/docs/cli/search): Search across your knowledge base and content.
- [Tasks](https://docs.elnora.ai/docs/cli/tasks): Drive the Elnora agent — create tasks and exchange messages.

## MCP & integrations

- [MCP & integrations](https://docs.elnora.ai/docs/mcp): Connect Claude Code, Cursor, VS Code, and other AI tools to Elnora over the Model Context Protocol.
- [Account](https://docs.elnora.ai/docs/mcp/account): Manage your account profile and agreements.
- [API keys](https://docs.elnora.ai/docs/mcp/api-keys): Create, list, and revoke API keys.
- [Audit](https://docs.elnora.ai/docs/mcp/audit): Read your organization's audit log.
- [Feedback](https://docs.elnora.ai/docs/mcp/feedback): Submit product feedback.
- [Files](https://docs.elnora.ai/docs/mcp/files): Upload, manage, and organize workspace files.
- [Feature flags](https://docs.elnora.ai/docs/mcp/flags): Read feature flags.
- [Folders](https://docs.elnora.ai/docs/mcp/folders): Create and manage folders.
- [Health](https://docs.elnora.ai/docs/mcp/health): Service health checks.
- [Library](https://docs.elnora.ai/docs/mcp/library): Manage your organization's shared library.
- [Organizations](https://docs.elnora.ai/docs/mcp/orgs): Manage organizations, members, and invitations.
- [Projects](https://docs.elnora.ai/docs/mcp/projects): Create and manage projects and members.
- [Protocols](https://docs.elnora.ai/docs/mcp/protocols): Generate and optimize bioprotocols.
- [Search](https://docs.elnora.ai/docs/mcp/search): Search across your knowledge base and content.
- [Tasks](https://docs.elnora.ai/docs/mcp/tasks): Create tasks and drive the Elnora agent.

## Plugins

- [Plugins](https://docs.elnora.ai/docs/plugins): Install Elnora in Claude Code, Cursor, and 30+ AI tools with one plugin — an MCP connection, skills, and a /protocol command.
- [Install & connect](https://docs.elnora.ai/docs/plugins/install): Connect Elnora to Claude Code, Cursor, OpenAI Codex, VS Code, Gemini CLI, or any MCP client.